PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729886
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ZF-HD
Protein Properties Length: 332aa    MW: 36235.8 Da    PI: 8.0147
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729886genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1085.5e-3453109459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                  ++YkeClkNhAa+lGgha+DGCgEfmps+++  +++++lkCaACgCHRnFHRre+++
    676729886  53 FTYKECLKNHAAALGGHALDGCGEFMPSPSSVsTDPTSLKCAACGCHRNFHRREPDN 109
                  68**************************9998899*******************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.4E-2854107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.1E-3254106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-1255110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.71755106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.2E-29188262IPR009057Homeodomain-like
SuperFamilySSF466891.13E-18188262IPR009057Homeodomain-like
TIGRFAMsTIGR015657.2E-26201258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0042803Molecular Functionprotein homodimerization activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDMTTTHTTI TPTPKSPEPE PETPTRIQPA KPISFSNGII KRHHHHYSPP LLFTYKECLK  60
NHAAALGGHA LDGCGEFMPS PSSVSTDPTS LKCAACGCHR NFHRREPDND SSSIPPPSSV  120
AAAIEYQPHH RHHPPPPPQQ PQPQAAPRSP NSSSPPPISS SYMLLSLSGT NNNNVAFSDL  180
NFSGNNNHHH HHNHHNQAGS RKRFRTKFTQ FQKEKMQEFA ERVGWKMQKR DEDDVRDFCH  240
EVGVDKSVLK VWMHNNKNTF SRRDIIPFSV AGATEVQKID NGGTVLAGEA NSHNNNNELH  300
HSVSSGGGGF DSDSGVGGGR ADGGNVNGSS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-212002591675ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00536DAPTransfer from AT5G39760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405598.11e-117hypothetical protein EUTSA_v10028098mg
SwissprotQ9LHF01e-104ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLE4MY351e-117E4MY35_EUTHA; mRNA, clone: RTFL01-43-G18
TrEMBLV4NL041e-117V4NL04_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.7__3447__AT5G39760.11e-102(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39760.14e-76homeobox protein 23